FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001721839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8843975
Sequences flagged as poor quality0
Sequence length30-51
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG369540.41784378630649677No Hit
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT268100.30314423095949505No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA237930.26903061123533256No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG231910.26222371727645094No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA223260.2524430473853669No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA205780.23267817921240166No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA138350.15643418259323438No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC114510.12947797794543744No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG105260.11901888008502964No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA100570.11371583479148234No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG93780.10603829160530191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)