FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18196114
Sequences flagged as poor quality0
Sequence length30-51
%GC28

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT973140.5348064976950573No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA661870.36374250018438004No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG588640.3234976435078391No Hit
AAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA374790.2059725499631405No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT352940.19396449153923745No Hit
ATAAAAATAACAATAATTATAATAACAAAAATAAAATATACTCATATAT330450.18160470966493175No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA297210.16333707295964403No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA283630.15587394099641275No Hit
AATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA254140.13966718388332805No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA216800.11914631882389833No Hit
AAAAAAAAAAACCATTTAAATACATAAATATAATCTAAACTATAATATC193600.10639634374680221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)