FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001721846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97006772
Sequences flagged as poor quality0
Sequence length30-51
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA8989820.9267208685183339No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT6425180.6623434495892719No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAGG5859000.6039784521435266No Hit
TGGAAAAAAAGAATTATTTGGATATATAGGTATGGTTTGAGTTATGATATT3382760.3487137990737389No Hit
TGGAGTAATTTAGGTTGGTTTTTATTTATTTTAAATTTTTTTTTGTATGAA2970040.30616831575428566No Hit
TGGATAATGAATTATAATTAATATTATTAATTAATATTTATTATTAATAAT2804540.28910765116480736No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG2269380.23394036861673945No Hit
TGGTGGGGATAGTGATGATTATGGTAGTGGAGGTGAAATATGTTTGTGTGT2155930.2222453088120487No Hit
TGGAGGAGGAGATTTTATTTTATATTAATATTTATTTTGATTTTTTGGTTA1212380.12497890353469344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)