FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001721847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97006772
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA6465020.666450379361144No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT6002800.6188021595028438No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA4083360.42093556107608654No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG3625180.3737038069878255No Hit
ATAAAAATAACAATAATTATAATAACAAAAATAAAATATACTCATATAT3379740.3484024806020759No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT3333480.3436337413639534No Hit
AATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA2689380.27723631500695645No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA2566720.2645918369492802No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1797970.18534479221718664No Hit
AAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCAC1714800.17677116397605724No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATC1534430.15817761671319194No Hit
AAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA1366450.14086129986883802No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA1217150.12547062178298235No Hit
AATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA1189200.12258937963630004No Hit
AAAAAAAAAAACCATTTAAATACATAAATATAATCTAAACTATAATATC1168460.12045138456931645No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA1154020.11896282869818615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)