FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22134229
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG692520.31287288118325696No Hit
ACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT636530.2875772180725157No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA627950.283700868912127No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA469770.2122368933654748No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA404300.18265827104255583No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG393650.17784671876305247No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA271940.12285948609278417No Hit
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT258830.11693653300505746No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA230690.10422319205245414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)