FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001729899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001729899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23123641
Sequences flagged as poor quality0
Sequence length6
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGCT6430432.7808899126223245No Hit
CGAATT5638322.43833572749205No Hit
TATTCT5199792.248689987878639No Hit
GTAAGA5033422.176741975885199No Hit
AGTCAA4850552.0976584094174444No Hit
GAGATA4750872.054551011235644No Hit
ATCCAC4705312.0348482317295966No Hit
AATCGG4121841.782522051782416No Hit
GGATTC3366641.4559298857822607No Hit
TGCGAC3003241.298774704208563No Hit
CGTACT2798381.2101813896868576No Hit
CTGGAG2510181.0855470382021586No Hit
GGACTA2495131.0790385476058895No Hit
CACATT2399551.0377042265964949No Hit
GCCATA2239590.9685282694018644No Hit
ATTCGA2234040.9661281283514132No Hit
ATTGCT2183430.9442414367183783No Hit
ATCCGG2057920.8899636523504235No Hit
ACTTGA1965020.8497883183707964No Hit
CTATGC1912900.8272486153889002No Hit
GACTTG1888570.8167269159731377No Hit
GGTGGT1863820.8060235842616654No Hit
AGAACG1861600.8050635278414849No Hit
GCTCAA1857660.8033596439245878No Hit
TCTTCA1838920.7952553838731539No Hit
ACAGTG1832740.7925827943791378No Hit
CTGAGG1813530.7842752791396476No Hit
AGCCTA1782870.7710161215528298No Hit
GGCTAC1778260.769022490878491No Hit
CCTTAT1746860.7554433144849464No Hit
CCAGCG1734680.7501759779093613No Hit
CAGTCC1733280.7495705369236618No Hit
TGTGAT1677250.7253399237602763No Hit
GCCAAT1676680.7250934227875273No Hit
GTACTT1659440.7176378495064856No Hit
TTCCAT1629340.7046208683139477No Hit
CCGGAA1627570.7038554179248847No Hit
ATGTGA1599780.6918374143587509No Hit
CTGTTC1593750.689229693541774No Hit
AGGTCA1592460.6886718229192367No Hit
GCTTCT1576490.6817654711037937No Hit
CATACG1525680.6597922879013733No Hit
AATTGC1514960.6551563397823033No Hit
TTCACA1467030.634428635179036No Hit
TACGAA1466100.6340264493813929No Hit
TCGGAC1400980.6058647943894302No Hit
AGTTAG1395230.6033781617695932No Hit
ACTAGC1394470.6030494938059279No Hit
GATCAG1366780.5910747360244868No Hit
CTTCAC1366500.5909536478273469No Hit
TTAGTA1360870.5885189101491414No Hit
ATGGCC1354280.5856690129378846No Hit
AGGACT1352890.5850678965306545No Hit
TGACAC1344800.5815693125490056No Hit
CGACAA1335720.5776425952988977No Hit
TAATGA1322430.5718952305132223No Hit
CATAAC1305810.5647077810972762No Hit
TAAGTC1302120.5631120116421112No Hit
TGGCAT1297220.5609929681921632No Hit
TCAAGC1294960.5600156134581055No Hit
CAGATC1258400.5442049545744115No Hit
GGTACC1251770.5413377590492777No Hit
ACGAAC1231170.5324291274025574No Hit
AGTGCA1207510.5221971747442369No Hit
ACGTAA1205400.5212846886872184No Hit
CAAGCT1200600.5192088910219631No Hit
GACCGA1192140.5155502976369509No Hit
CGCTTG1185960.5128777081429348No Hit
TTCTAC1167610.5049421066518028No Hit
TGTGTG1162660.5028014403095084No Hit
CCTGAC1145610.49542803401938296No Hit
AGATGC1137930.49210675775497464No Hit
GCCTGG1127800.4877259597655923No Hit
ACCTGC1125600.48677455250235024No Hit
TGCATA1124670.48637236670470707No Hit
GATTCA1118490.48369977721069096No Hit
GGCGTT1111710.480767713008518No Hit
ATTGAA1094810.4734591753954319No Hit
CCGTCG1087290.470207092386532No Hit
ATGCCG1079140.46668256093406746No Hit
AAGTTG1078400.46636254212734063No Hit
GACCAT1062990.4596983667061775No Hit
TTCTGT1061190.45891994258170676No Hit
CTGTAT1056050.45669710924849594No Hit
TCATGT1054560.45605274705657295No Hit
AGGCTT1028830.44492560665511116No Hit
GGCAGG1025220.4433644338277004No Hit
AATGTA1023300.4425341147615983No Hit
TACAGT1016760.43970584044268807No Hit
CGAGCC1015450.43913932066321215No Hit
ATACCT1015250.43905282909382654No Hit
TCAATG997880.4315410362926842No Hit
GAATAC997830.4315194134003377No Hit
CTACCG997750.43148481677258355No Hit
TATTGG990180.42821111087133723No Hit
GTTGGC951800.411613378706234No Hit
CCGACT924870.39996728888845834No Hit
ACACGA923750.39948293609989877No Hit
AACAAT922650.3990072324682778No Hit
GAGCAC910450.3937312467357541No Hit
AAGCAT909600.39336365756586517No Hit
CGAAGC889980.38487883460913447No Hit
TCCTCC883070.3818905508868608No Hit
CCACTT881030.3810083368791273No Hit
GGCCAG878520.3799228676833376No Hit
TAGCTT862820.3731332794865653No Hit
CAAGGA856950.37059475192509694No Hit
GAGCCA819890.3545678641179389No Hit
CGTTGC816240.35298939297665105No Hit
CCTGCT815750.3527774886316562No Hit
CAGGAC814730.3523363816277895No Hit
CCATGA799890.34591870717937545No Hit
AGACGG787440.34053460698511967No Hit
TTCGTT776000.3355872892162614No Hit
ATCAGC773210.3343807318233318No Hit
TGATAA770430.3331784990088715No Hit
TTACGT755660.3267910966097424No Hit
CATTAA746950.323024388762998No Hit
GATCCT739150.31965121755695824No Hit
CTAGTT735520.318081395572609No Hit
CACCTA733000.31699160179835No Hit
TCGTGG720300.31149938714236225No Hit
GCGGCT712730.308225681241116No Hit
GCGCAG708940.30658666600125817No Hit
CTATTA705250.30499089654609324No Hit
CTCGTC698760.3021842451195294No Hit
CAGTAG694180.3002035881805984No Hit
CCTCGG682640.29521302462704724No Hit
TTAGGC682240.295040041488276No Hit
TGACCA679690.2939372739786092No Hit
CTTGTA665000.2875844682072343No Hit
TGCGGA646340.2795148047835546No Hit
GTGGTG645350.27908667151509575No Hit
GAAGAT644330.278645564511229No Hit
GTCTCA629670.27230573247526196No Hit
AACATA605440.26182727884419243No Hit
CAACGG597280.25829842281325854No Hit
ACCAGG597150.25824220329315783No Hit
AGTAGG591160.2556517807900581No Hit
AGTTCC574420.2484124364324805No Hit
GCACAT571700.24723615108883587No Hit
TCCACG568920.24603391827437557No Hit
GAGAAG566770.24510413390348No Hit
AAGAGG562270.2431580735923032No Hit
AACTCT561620.24287697599179991No Hit
GTTACA560650.24245749188027957No Hit
GAGTGA556920.2408444241112375No Hit
TTAGCG556850.24081415206195253No Hit
GAGTCG544890.2356419562126916No Hit
TATGGT539600.23335425420244155No Hit
GCGTAT538060.2326882691181722No Hit
CGAGAG530750.22952700225712724No Hit
TAGAGC502130.21715005867804296No Hit
GGATCG501540.21689490854835533No Hit
GTACGC494960.214049335915568No Hit
GGAGGC443350.19173018643560502No Hit
CAGCCT434300.18781644292090505No Hit
GCATAA423150.18299453792765596No Hit
GACTAA417450.18052952820016535No Hit
GACACG414750.17936189201345928No Hit
TATAAG411770.17807316762961334No Hit
AACTAG409580.17712608494484067No Hit
TACTCG408860.17681471529505235No Hit
AAGGCG406220.175673026579162No Hit
GAACCG400280.17310422696840866No Hit
TCTCGC387800.16770715303874506No Hit
GGCCGT380970.16475346594422563No Hit
TACGGC378370.1636290755422124No Hit
CATGAG355360.15367822048439517No Hit
CGTCAG352620.15249328598381198No Hit
TCTCTG350500.15157647534832425No Hit
TTGAAT338500.1463869811851862No Hit
ATTCAT331740.14346356613995176No Hit
ACGCTA321740.13913898767067004No Hit
ACAGCC318450.13771620135427634No Hit
GGTAAT301390.13033847048568173No Hit
CCGCTC278380.1203876154278645No Hit
CTCCGC267630.11573869357338665No Hit
GTCTGC246100.1064278761290231No Hit
GCTGTC234280.10131622437833211No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)