FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001729923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001729923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24996329
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCAC3378941.3517744945667822No Hit
TTACGT3307471.3231822960883577No Hit
TTCACA3081361.232725013340959No Hit
GTGGTG2932401.1731322627414609No Hit
GATTCA2899131.159822308307752No Hit
CGTACT2757521.1031699894812554No Hit
AGTGCA2650611.0603997090932833No Hit
GACCAT2619731.0480458950592304No Hit
CACCTA2448610.9795878426788189No Hit
ATTCGA2438100.975383225272799No Hit
CTGAGG2381400.9526998944525014No Hit
TCTTCA2336290.9346532444824198No Hit
ACTTGA2278720.9116218625542973No Hit
GGTAAT2220990.8885264712270349No Hit
GCGCAG2183630.8735802765278053No Hit
CAAGGA2181970.872916179011726No Hit
CCAGCG2174170.8697957208036428No Hit
TCAAGC2170940.8685035310585006No Hit
ATTGCT2114550.845944218449037No Hit
CTTGTA2051370.8206685069635625No Hit
ACAGTG2039900.8160798331627016No Hit
ACCAGG2024430.8098909243833364No Hit
CCACTT2010810.8044421242815295No Hit
AATTGC1963010.7853193162884038No Hit
AGAACG1961490.7847112269965721No Hit
GATCCT1949030.7797264950385314No Hit
CAGATC1944120.7777622066024176No Hit
TCCTCC1922850.7692529571042211No Hit
TACAGT1921520.7687208789738685No Hit
GATCAG1912410.7650763438103251No Hit
ACCTGC1899770.7600196012782517No Hit
AACATA1887720.7551988934055076No Hit
AACTCT1886920.7548788464098068No Hit
GCCAAT1851620.7407567727245068No Hit
AGGTCA1848840.7396446094144464No Hit
CAGCCT1837960.7352919702729148No Hit
TTCTAC1812140.72496245348667No Hit
TCATGT1793030.717317330876866No Hit
CGAGCC1785230.7141968726687826No Hit
TGCGAC1784880.7140568521081635No Hit
TGTGAT1781680.7127766641253602No Hit
GTCGAG1740110.6961462221112549No Hit
AAGCAT1735620.6943499583478838No Hit
TAGCTT1701980.6808919821786631No Hit
GAGCCA1695070.678127576253297No Hit
GGATCG1688410.6754631850140875No Hit
CGTCAG1662720.6651856758646439No Hit
TGATAA1659770.6640055025679971No Hit
GGAGGC1655720.6623852646522616No Hit
GCGTAT1601130.6405460577831249No Hit
TCCACG1600340.6402300113748702No Hit
GACACG1593980.6376856377590485No Hit
CGAATT1577000.630892640275298No Hit
TACTCG1576650.6307526197146789No Hit
ATGTGA1563590.6255278525098625No Hit
CTGTAT1562550.6251117914154515No Hit
TATTGG1553440.621467256251908No Hit
CTCGTC1552370.6210391933951582No Hit
CAGGAC1513300.6054088982426179No Hit
AGGCTT1513060.6053128841439077No Hit
TAGAGC1512770.605196867107966No Hit
TAAGTC1510380.6042407267083099No Hit
CAAGCT1505420.6022564353349645No Hit
GGCAGG1500380.6002401392620492No Hit
GGCTAC1499020.5996960593693578No Hit
GTACGC1497160.5989519501043533No Hit
CTATTA1491280.5965996046859521No Hit
CCGTCG1485810.5944112833528475No Hit
CCGGAA1478810.5916108721404651No Hit
CATAAC1471620.5887344497666037No Hit
GCTCAA1459160.583749717808563No Hit
GAGAAG1442630.5771367467598942No Hit
AGTTCC1437580.5751164500995326No Hit
GGCCGT1421610.5687275119478544No Hit
ACGCTA1410290.5641988469586874No Hit
CGAGAG1395720.5583699910494857No Hit
TTCTGT1388070.5553095416530963No Hit
ACTAAT1386220.5545694329755382No Hit
AAGCGC1360080.5441118973910128No Hit
ACACGA1348380.539431210078888No Hit
ATTCAT1345220.5381670244458696No Hit
TATTCT1339460.5358626860768235No Hit
CTAGTT1338120.5353266073590246No Hit
GAAGAT1326480.5306699235715773No Hit
AGATGC1321180.5285496122250591No Hit
CTTAGC1311140.5245330224290135No Hit
GCACAT1310930.524449010092642No Hit
TCTCTG1296000.5184761330353749No Hit
TGACCA1277000.5108750168874797No Hit
GTAAGA1270520.5082826362223029No Hit
TTCCAT1250320.5002014495808564No Hit
GTCTGC1238450.49545275228214514No Hit
ATCCGG1233240.4933684462226433No Hit
TCTCGC1226590.49070805557088004No Hit
AGGTGT1222750.4891718299915159No Hit
CATTAA1206590.4827068806783588No Hit
TTGAAT1198070.4792983801741447No Hit
CAGTCC1194110.4777141475454255No Hit
GGTACC1186420.4746376957992512No Hit
ATACCT1183380.473421517215588No Hit
ATTGAA1183280.4733815113411253No Hit
AACCTT1163840.4656043693455947No Hit
TATAAG1163760.4655723646460246No Hit
CCTGCT1156040.4624839111375114No Hit
GTCTCA1133870.45361460876915166No Hit
TGCGGA1128480.45145829213561717No Hit
CTACCG1120930.4484378486136904No Hit
AAGAGG1112520.44507335457138525No Hit
CCATGA1090470.4362520592523806No Hit
GTACTT1086930.4348358512964044No Hit
CTCCGC1082720.43315160398152863No Hit
CGTGAA1062470.4250504144028509No Hit
TCCAGA1023700.40954013687369856No Hit
TCGGAC1020500.4082599488908952No Hit
TTAGTA1018980.4076518595990636No Hit
TATGGT1001790.40077484977894157No Hit
TGGCAT992410.39702229875434913No Hit
GTTGGC972430.38902912503672044No Hit
GCGGCT971430.3886290662920943No Hit
GCTGTC964750.3859566738779922No Hit
CCGCTC933710.3735388504447993No Hit
TGACAC932570.3730827834759256No Hit
GGATTC916090.3664898153644881No Hit
CGCTTG910150.36411346642140935No Hit
TAATGA901730.3607449717916579No Hit
AGTCAA899180.35972482199286143No Hit
TTCGTT877260.3509555343106582No Hit
ACCGCT875800.35037144854350416No Hit
AATGTA872850.3491912752468572No Hit
CATGAG868600.3474910255821965No Hit
TGCATA854610.3418942037448779No Hit
CTATGC845800.3383696862047223No Hit
AGCCTA844860.3379936309847738No Hit
TTAGGC828280.3313606569988737No Hit
GAGATA827500.3310486111780654No Hit
AGAGGT824180.32972041614590686No Hit
GCCTGG796670.3187148000812439No Hit
CCTGAC794420.3178146679058353No Hit
CCGACT791660.31671050577066734No Hit
CGACAA790270.31615442411563716No Hit
AACTAG782930.31321799293008185No Hit
ACGAAC776710.31072962753850775No Hit
ATCCAC772420.309013375524062No Hit
TCGTGG771260.30854930738029573No Hit
AAGGCG766650.3067050365675696No Hit
GGTGGT759390.3038006100815844No Hit
CCTCGG724820.2899705792798614No Hit
GACCGA712610.28508586200797725No Hit
ATCAGC709110.283685656401786No Hit
GTTACA706910.28280552716360874No Hit
CATACG704250.28174137090290335No Hit
TACGAA702660.2811052774989479No Hit
AGTAGG677040.2708557724616283No Hit
GACTAA675470.2702276802325653No Hit
AGTTAG674630.26989163088707946No Hit
TCAATG671120.268487424693442No Hit
ACGTAA649840.2599741746077994No Hit
GCCATA615370.2461841496805391No Hit
GACTTG601140.24049131374451024No Hit
AGGACT591610.23667875390822388No Hit
CGTTGC572360.22897762307417222No Hit
GAATAC571100.2284735490559434No Hit
AATCGG554960.22201660091767875No Hit
CAACGG554270.2217405603838868No Hit
TTAGCG553110.22127649224012053No Hit
CGTCTC543220.21731991125576877No Hit
AACAAT525200.2101108526776072No Hit
CTGTTC521170.20849861593676416No Hit
AAGTTG508990.20362590042721876No Hit
CGAAGC500380.20018139463598836No Hit
GGCGTT497510.19903322603891158No Hit
CACATT473800.18954783320382765No Hit
GAGTCG472030.18883972922583953No Hit
ACAGCC447690.17910229938164118No Hit
GCATAA441300.17654592400348068No Hit
NNNNNN439400.17578581238869115No Hit
GAGTGA438580.17545776421809778No Hit
CTGGAG432500.17302540705077132No Hit
GCTTCT430810.1723493077723533No Hit
ACTAGC416910.16678849122205103No Hit
CAGTAG412620.16507223920760525No Hit
GAACCG391820.15675101731938318No Hit
TACGGC390990.15641896856134355No Hit
AGACGG388000.15522279291491164No Hit
GGACTA384590.15385859259573675No Hit
GAGCAC377820.15115019489461834No Hit
TGTGTG362620.1450693019763022No Hit
ATGGCC328840.13155531758283384No Hit
CCTTAT326170.13048716073468228No Hit
GGCCAG266420.10658365074327514No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)