FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001729937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001729937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21824993
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTG2808541.286845773558782No Hit
ATTCGA2693961.2343463294581585No Hit
CTCGTC2691621.2332741641658258No Hit
ACTTGA2628021.2041332613485831No Hit
CCACTT2594531.1887884683399441No Hit
GATCAG2555101.1707220249738453No Hit
TCTCGC2452961.1239224681538271No Hit
AACCTT2429941.113374927542932No Hit
ATTGCT2360241.081439063920891No Hit
GGCTAC2315401.0608938110541433No Hit
GGTAAT2295581.0518124793900276No Hit
TCATGT2293831.0510106463722577No Hit
TCCAGA2265521.0380392790962178No Hit
TACTCG2251611.0316658520806856No Hit
ACAGTG2159810.9896039829199488No Hit
CCTGCT2096510.9606005371914667No Hit
CGTACT2046790.9378193156808802No Hit
GAGATA2026500.9285226345777063No Hit
GTCGAG2008130.9201056788426002No Hit
AAGGCG1982290.9082660415973559No Hit
CGAATT1953280.8949739411142079No Hit
AGGTGT1950810.8938422110834124No Hit
CACATT1941470.8895627137199997No Hit
CTTAGC1923120.8811549217908112No Hit
CTAGTT1920900.8801377393339829No Hit
TTACGT1917720.8786806941931208No Hit
ATTGAA1885150.8637574362566804No Hit
TTCTAC1853420.8492190581687702No Hit
TTGAAT1850540.8478994701166686No Hit
TATAAG1812700.830561549321001No Hit
TGTGAT1796630.8231984312663926No Hit
GGCCGT1779120.8151755191857336No Hit
AGAGGT1764070.8082797552329112No Hit
TGATAA1719490.7878536318430893No Hit
CAGCCT1692750.775601623331563No Hit
GGTACC1688450.773631405059328No Hit
CTGTAT1682050.770698987165769No Hit
TAGCTT1662630.761800931620001No Hit
GAGAAG1649790.7559177682210482No Hit
TGCATA1617800.7412602606562119No Hit
ACTAGC1607180.7363942797140874No Hit
AGATGC1602620.7343049319649266No Hit
GACTTG1576690.7224240575930541No Hit
CGTGAA1556370.7131136307810041No Hit
ATCCAC1553370.7117390598933984No Hit
CAGTCC1545070.7079360804376891No Hit
GCCATA1515460.69436906577702No Hit
GGCGTT1508700.6912716993769483No Hit
ACGCTA1453560.666007086462754No Hit
AGTGCA1432100.656174322713414No Hit
TTCACA1428490.6545202557453283No Hit
CCGTCG1419480.6503919611795522No Hit
CATACG1402650.6426806185000838No Hit
GCCAAT1401790.6422865748456369No Hit
AACATA1401520.6421628634657524No Hit
GCTCAA1400330.6416176170136687No Hit
CTCCGC1400330.6416176170136687No Hit
GCGCAG1398950.6409853144053701No Hit
CCTTAT1372030.6286508316405874No Hit
GTACGC1367500.6265752296003027No Hit
TTAGTA1320730.6051456694625286No Hit
AAGCAT1308370.5994824374055928No Hit
CAGATC1303210.5971181754789108No Hit
AGGTCA1296680.594126192846889No Hit
GCACAT1274510.5839681139874822No Hit
GGACTA1268360.5811502436678903No Hit
CCATGA1258310.5765454311944109No Hit
ATTCAT1243940.5699612366427792No Hit
AATTGC1234830.5657871230474163No Hit
CTTGTA1208990.5539474858021719No Hit
CCAGCG1206110.5526278977500703No Hit
CACCTA1183500.5422682151604814No Hit
GTCTGC1167480.5349280066206665No Hit
ATACCT1166500.5344789801307153No Hit
GATTCA1163380.5330494264076052No Hit
CGCTTG1160380.5316748555199995No Hit
TTCTGT1159980.531491579401652No Hit
GTAAGA1151620.5276611085281906No Hit
GACCAT1148480.5262223909991632No Hit
TCGTGG1142950.5236885986630099No Hit
CTGTTC1131440.5184148283575624No Hit
CAAGCT1129300.5174343011244036No Hit
AGTCAA1108330.5078260506200392No Hit
ATGTGA1101650.5047653394436369No Hit
ACGTAA1071100.4907676259048514No Hit
TGCGAC1055740.4837298229603098No Hit
GCGGCT1046910.4796840026477901No Hit
AAGCGC1045030.4788226048915571No Hit
ACTAAT1044250.47846521646077966No Hit
CTGAGG1031430.47259121686774425No Hit
GAAGAT1021400.4679955682001823No Hit
CGTCTC1017780.4663369193291379No Hit
TCTTCA1002770.4594594829881503No Hit
TCCTCC993150.45505169234189446No Hit
CCGGAA970060.4444720784102886No Hit
AGAACG963400.44142053103980383No Hit
AGGCTT954260.4372326717355648No Hit
GGAGGC948960.4348042631674613No Hit
GGATTC944030.4325453850088291No Hit
CTACCG938640.43007573931409737No Hit
TGACCA907300.41571605544157564No Hit
AGTTAG883120.404637014087473No Hit
GCCTGG880500.40343655551229723No Hit
TTCCAT876960.4018145618649225No Hit
TTAGGC876530.40161754003769895No Hit
TCAAGC868570.397970345282585No Hit
CAAGGA843930.3866805363923828No Hit
ACCAGG817530.3745843125814519No Hit
TATTCT815410.3736129491542105No Hit
ATCCGG814130.3730264655754987No Hit
CTGGAG811040.3716106575612647No Hit
ATGCCG797580.36544341617887344No Hit
CATGAG797040.3651959934191044No Hit
AACTCT788580.3613197035160561No Hit
TACGGC784670.3595281794592099No Hit
ACCGCT779120.3569852233171392No Hit
ACACGA777830.35639415783546874No Hit
CAGTAG776550.3558076742567569No Hit
ACGAAC766880.3513769740957076No Hit
TCGGAC765300.3506530334282353No Hit
TAGAGC756290.3465247388624592No Hit
ACCTGC751870.34449953775472003No Hit
GAATAC745020.3413609342280201No Hit
AATGTA727140.3331684917378897No Hit
AGCCTA720240.3300069786963964No Hit
CTTCAC701120.32124638023938884No Hit
ATCAGC700620.32101728509145455No Hit
GGCCAG690250.31626585172329724No Hit
ATGGCC687550.315028737924452No Hit
CGTTGC683450.3131501577113908No Hit
AGGACT680060.3115968926083963No Hit
CGAAGC673330.3085132719172006No Hit
GTTGGC673100.3084078881491508No Hit
AAGAGG653450.29940444883533296No Hit
CGTCAG652840.2991249527548531No Hit
TCCACG652260.2988592023832493No Hit
GAACCG648470.29712266116190733No Hit
TGACAC642840.2945430497961672No Hit
GACTAA630990.2891134947901243No Hit
CGAGCC630600.2889348005747356No Hit
TACGAA627900.28769768677589036No Hit
CCGCTC621070.28456824705510786No Hit
TAATGA618610.28344109892727115No Hit
GAGCAC618220.28326240471188235No Hit
GACACG617140.2827675591923443No Hit
TAAGTC615560.2820436185248719No Hit
CGACAA607630.27841016947863395No Hit
CCGACT602040.27584888572472854No Hit
ACAGCC565090.258918754292384No Hit
AAGTTG562990.25795655467105993No Hit
CATTAA541710.24820626517497624No Hit
GGCAGG537170.24612608123173282No Hit
TGCGGA535350.24529217489325195No Hit
GCGTAT524600.24036662921266458No Hit
GGTGGT517140.23694852960548488No Hit
TACAGT516610.23670568874867454No Hit
CCTGAC510230.23378243466103285No Hit
CAGGAC509620.23350293858055304No Hit
GCTTCT507100.23234829903496418No Hit
CCTCGG506830.23222458765507964No Hit
GTACTT506250.23195883728347588No Hit
GAGCCA498380.22835287965499002No Hit
AACTAG490850.22490270672709956No Hit
GAGTCG462170.21176180904158823No Hit
AACAAT445160.20396799210886346No Hit
TCTCTG426390.19536776025540994No Hit
TCAATG424410.1944605434695901No Hit
GCTGTC412370.18894393230733222No Hit
GTTACA411840.18870109145052189No Hit
AATCGG386300.176998911294038No Hit
TATGGT380700.17443304563717388No Hit
CAACGG378930.17362204881348645No Hit
GAGTGA378750.17353957456023011No Hit
AGTTCC374240.17147313632586272No Hit
TTCGTT370450.16973659510452077No Hit
GTCTCA361910.16582364997780297No Hit
GACCGA345570.15833682054331014No Hit
CATAAC343460.1573700390190274No Hit
TTAGCG339070.15535858362016428No Hit
AGACGG312910.14337232548024187No Hit
CTATGC311050.14252009152992626No Hit
TATTGG302730.13870794826829957No Hit
AGTAGG281030.12876521884795106No Hit
GGATCG279100.12788091157692466No Hit
GATCCT264780.12131962654008639No Hit
TGGCAT261460.11979843475780268No Hit
CGAGAG254480.11660026649263988No Hit
CTATTA223090.1022176731053247No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)