FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001729943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001729943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20827803
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGC4604212.210607619056124No Hit
CACCTA4494542.15795204131708No Hit
CCATGA3550111.7045052711512587No Hit
GCACAT3338471.6028910970590609No Hit
TTAGTA3241371.5562707214006202No Hit
CAAGCT2777721.333659627950197No Hit
TTACGT2641141.2680838204586435No Hit
ATTCGA2597731.2472414877363687No Hit
CCTGCT2578881.238191085252727No Hit
AGGCTT2576481.2370387793662154No Hit
AGTGCA2523691.2116928511374916No Hit
AAGAGG2343671.1252603071000817No Hit
TAGCTT2107801.0120126448286457No Hit
TCATGT2061110.9895954940614716No Hit
CTCGTC2057550.987886240329813No Hit
ACCTGC1972650.9471234195944719No Hit
ACGTAA1933250.9282063979575763No Hit
CCGGAA1891150.9079930321983553No Hit
GATCAG1874010.8997636476588529No Hit
GAGAAG1869600.8976462855923881No Hit
CTGTAT1850370.8884134346767155No Hit
ACGCTA1834380.8807361967078332No Hit
TCGTGG1816430.8721179089316333No Hit
GCTCAA1789340.8591112562376358No Hit
TCTTCA1784960.8570082979947525No Hit
ACACGA1753330.8418218666654376No Hit
CAGTCC1737840.8343846924229119No Hit
TGATAA1713730.8228088195379993No Hit
CAGATC1675590.804496758491522No Hit
CTTGTA1642410.788566129610502No Hit
GCCAAT1641010.7878939511767037No Hit
CGTACT1631980.7835584002787045No Hit
AGAACG1619170.7774079676094497No Hit
CGAATT1604040.7701436392499007No Hit
CGTGAA1548000.7432372967998593No Hit
GACCAT1542050.7403805384562164No Hit
TGCATA1526260.7327993259778768No Hit
GCCATA1503200.721727586918313No Hit
TGTGAT1501860.7210842161316775No Hit
ATTCAT1494740.7176657086683602No Hit
TATTGG1487550.7142135922833531No Hit
CAGGAC1469160.7053840484279595No Hit
CGAGCC1459790.7008852541960379No Hit
CTGGAG1451620.6969626129073719No Hit
ACAAGT1446160.6943411170155585No Hit
CCAGCG1415950.6798364666690961No Hit
ACAGTG1402610.6734315664499035No Hit
ACTTGA1397160.6708148718326171No Hit
ATACCT1390750.6677372548607263No Hit
CTGAGG1381470.6632816720995489No Hit
GTAAGA1340550.6436348567345292No Hit
CTATTA1327420.6373307832804065No Hit
TGACCA1319530.6335425776785002No Hit
GAGCCA1278630.613905364862535No Hit
GTGGTG1257490.6037554705121803No Hit
TAAGTC1233940.5924484690007871No Hit
TTCTAC1231520.5912865605652214No Hit
CCACTT1200710.5764938337471313No Hit
ATTGAA1199570.5759464884510382No Hit
GGTAAT1195010.5737571072666665No Hit
TTCCAT1176630.5649323646858001No Hit
CTTCAC1172880.563131886738126No Hit
GGATTC1164180.5589547778995221No Hit
GAGTCG1162680.5582345867204525No Hit
CACATT1161330.5575864146592898No Hit
CCGTCG1159130.556530134263321No Hit
GGCTAC1156490.5552625977881585No Hit
TCAAGC1151890.5530540115056782No Hit
TTCACA1142660.5486224351171364No Hit
TTCTGT1137440.5461161698139742No Hit
CGATGT1131000.5430241490185018No Hit
GTACTT1125010.5401481855767504No Hit
TACTCG1102410.5292973051454347No Hit
CTGTTC1099030.5276744743552645No Hit
AACTCT1096230.5263301174876678No Hit
TCCACG1095190.5258307849368462No Hit
GAAGAT1089280.5229932316913118No Hit
CAGCCT1085000.5209382861936999No Hit
GCGCAG1079600.5183455979490491No Hit
CTAGTT1074210.5157577109789255No Hit
AACATA1070080.5137747845992205No Hit
AACCTT1060430.5091415546805392No Hit
ACTAAT1059670.5087766578164774No Hit
GACTTG1055440.506745718691501No Hit
GAGATA1051540.50487322162592No Hit
AATTGC1030150.49460329541238696No Hit
GATCCT1030130.4945936928633327No Hit
CATAAC1022990.49116558285096124No Hit
ATTGCT1003180.48165425801271505No Hit
AGTCAA1002510.4813325726193972No Hit
AAGGCG995450.4779428728032428No Hit
ATCCGG988660.474682807399321No Hit
AGGTCA987270.4740154302400498No Hit
GGCCGT969660.4655603857977723No Hit
TTAGGC967870.46470095765741587No Hit
GGTACC959830.46084073293760264No Hit
TACAGT953380.45774391086760324No Hit
TGCGAC945490.45395570526569706No Hit
TAGAGC943620.4530578669291236No Hit
ACGAAC941380.4519823814350462No Hit
GTTGGC932440.4476900420077912No Hit
GTCTGC926860.44501093082165216No Hit
TCTCGC926340.4447612645462414No Hit
CGAAGC898120.43121206783067806No Hit
GATTCA893590.42903709046988775No Hit
AGTTAG867810.4166594047389444No Hit
ACCAGG864140.4148973369874873No Hit
GTACGC860170.4129912310002164No Hit
ATCCAC856750.4113491951119376No Hit
CATGAG850350.40827637941457384No Hit
CAAGGA849540.4078874761778763No Hit
GACACG846170.40626944666223314No Hit
AACTAG813830.3907421248414919No Hit
TCGGAC791500.3800208788224087No Hit
TCCTCC785640.37720733194951No Hit
GGATCG769860.3696309207456975No Hit
TTGAAT766910.36821454476019383No Hit
AAGCAT738580.3546125340248321No Hit
ATGTGA731930.35141968646429006No Hit
TGACAC727850.3494607664572207No Hit
GCGTAT719850.34561974683551594No Hit
CATACG709310.34055920348392005No Hit
TATTCT690120.33134555766635587No Hit
CCTCGG677550.3253103555857524No Hit
CTACCG675290.32422526754262077No Hit
CTCCGC665720.3196304478201566No Hit
ACAGCC647300.3107865001411815No Hit
GGACTA644730.30955257258770885No Hit
CAACGG624450.29981558784668744No Hit
ACTAGC619780.2975733926425173No Hit
CGACAA598000.28711621672242627No Hit
TACGAA595550.2859399044632792No Hit
AGGACT572990.27510822913007194No Hit
ATCAGC572730.27498339599236654No Hit
AATCGG571630.2744552557943822No Hit
AGTAGG562810.2702205316614527No Hit
GTCGAG560830.2692698793050808No Hit
AAGCGC553650.2658225641946008No Hit
GGCAGG544900.2616214489833613No Hit
TAATGA538150.258380588677548No Hit
GCCTGG537560.25809731348044723No Hit
CGTCAG537150.2579004612248349No Hit
TATAAG530490.2547028123897658No Hit
AGGTGT525640.25237419424410723No Hit
CGAGAG510100.24491301362894588No Hit
TGCGGA509500.24462493715731803No Hit
CCGCTC496530.23839768409562928No Hit
CGTTGC491920.23618429653862197No Hit
TACGGC485390.23304906427240552No Hit
GAATAC471360.22631287611084086No Hit
CCTGAC455150.21853001010236173No Hit
GACTAA449110.21563004028797467No Hit
TCCAGA447340.21478021469667252No Hit
CGCTTG439780.21115045115416156No Hit
TATGGT430580.20673327858920118No Hit
CAGTAG428650.20580663260546495No Hit
AGTTCC423020.20310351504669025No Hit
GTCTCA415170.1993345145428925No Hit
GAGTGA412120.19787012581211758No Hit
GCTTCT410590.19713553080946655No Hit
TGGCAT405510.1946964833496841No Hit
GGCGTT395820.19004404833289426No Hit
GAACCG391160.18780665440325126No Hit
AGCCTA371330.17828572701595075No Hit
CATTAA370250.17776718936702063No Hit
CCTTAT367810.17659567838240067No Hit
CTATGC349360.16773732687984422No Hit
GCGGCT348590.16736762874125516No Hit
ACCGCT331970.15938791047716364No Hit
GCTGTC330910.15887897537728776No Hit
GGTGGT323810.15547007046302483No Hit
GTTACA313420.15048154622933585No Hit
GAGCAC301270.14464799767887185No Hit
CCGACT295310.14178643806070185No Hit
TCAATG289910.13919374981605118No Hit
TTAGCG288600.138564782852997No Hit
AATGTA261440.1255245212373096No Hit
TGTGTG253390.12165949524296923No Hit
ATGCCG246900.11854346807486128No Hit
AAGTTG236300.11345411707610255No Hit
CTTAGC228140.10953627706196377No Hit
AGAGGT209050.10037064398967091No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)