FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001729967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001729967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16671872
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT2030861.2181355519044292No Hit
TATTCT1952081.1708823100369292No Hit
GTAAGA1818041.0904834202181974No Hit
TACAGT1789941.0736286842893228No Hit
ACCGCT1750071.0497141532756489No Hit
GTACTT1725831.035174694239495No Hit
CAGCCT1679151.0071754389669019No Hit
GAGAAG1664760.9985441346958519No Hit
AATTGC1657660.9942854647636451No Hit
GAGATA1620280.9718644672895762No Hit
CTTAGC1614760.968553501370452No Hit
ACTTGA1590020.9537141360010443No Hit
TACTCG1530290.9178873254305214No Hit
CTGAGG1523940.9140785149981958No Hit
AACTCT1519470.911397352378905No Hit
CAGATC1514180.9082243433730777No Hit
TTCTAC1508680.9049253737072837No Hit
GTCGAG1508470.904799413047317No Hit
TATTGG1504520.9024301530146104No Hit
CCTGAC1504500.9024181567612803No Hit
CGAATT1489090.8931750435703921No Hit
TCCACG1471010.8823304305599275No Hit
GCCAAT1460080.8757744781149952No Hit
CAAGGA1446640.8677129958771277No Hit
GAAGAT1430460.8580080269330282No Hit
TGACAC1427060.8559686638669011No Hit
ACGCTA1410470.8460177717295334No Hit
TCATGT1389270.8333017431995638No Hit
ATTGCT1373900.8240826225153361No Hit
CCACTT1350940.8103109236923124No Hit
GGTAAT1316550.7896833660911025No Hit
GGCCGT1300780.7802243203402713No Hit
AGAGGT1293460.7758336916214328No Hit
TTACGT1292070.7749999520149867No Hit
CTCCGC1288390.7727926414022372No Hit
GGTACC1273820.7640533708512157No Hit
GATTCA1257740.7544083831737671No Hit
ACACGA1238690.7429819518767898No Hit
GATCAG1233330.739766955984307No Hit
CGAGCC1221530.7326891665195125No Hit
GTCTCA1210470.7260552384279342No Hit
ACAGTG1203880.7221024729556466No Hit
GTGGTG1201880.7209028476226305No Hit
AGTCAA1196460.7176518629701572No Hit
TCTCGC1187400.7122175602115947No Hit
GGCTAC1185530.7110959105252248No Hit
CTATGC1182860.7094944107056484No Hit
TTAGCG1181690.708792629885834No Hit
AGTTCC1179470.7074610457661863No Hit
GCCTGG1178480.7068672312263433No Hit
CAGGAC1162880.6975101536288186No Hit
TAATGA1115930.6693489489362682No Hit
ATGTGA1115320.6689830632096984No Hit
ATCCGG1113070.6676334847100553No Hit
GGCAGG1110780.666259913703752No Hit
TAGAGC1095690.6572087405661463No Hit
CTTCAC1094770.656656912912959No Hit
TCCAGA1083230.6497350747414568No Hit
AAGCGC1072200.6431191410298736No Hit
CGTCAG1071600.6427592534299688No Hit
GGATCG1016750.6098595286720051No Hit
GGATTC984810.5907015121037398No Hit
AACATA971710.582843966172485No Hit
GATCCT965370.5790411538668243No Hit
AATCGG964720.5786512756335942No Hit
TGACCA963760.5780754554737464No Hit
GAGCCA946770.5678846382697755No Hit
GGACTA913680.5480368371350259No Hit
CGTCTC911460.5467052530153782No Hit
TAAGTC903220.5417627966433524No Hit
CATACG889230.5333714174389055No Hit
TTAGGC886100.5314940037927355No Hit
ATTCGA882960.5296105920199004No Hit
ATCCAC845010.5068477013259219No Hit
CCAGCG825570.49518734308900647No Hit
CGCTTG822920.4935978395227602No Hit
TGTGAT819360.49146250642999173No Hit
TCAAGC812870.4875697222243549No Hit
CGTGAA809630.485626329184869No Hit
TTGAAT802000.48104975853941295No Hit
CATGAG798620.4790223917266159No Hit
CATTAA789550.4735820908413884No Hit
CACATT789030.4732701882548042No Hit
CTTGTA785710.47127881020199774No Hit
AAGGCG771280.4626235134242873No Hit
CTCGTC771010.46246156400433014No Hit
TGGCAT770560.46219164830440157No Hit
TACGGC770460.4621316670377507No Hit
AGGACT769450.4615258562445777No Hit
TGCGAC748930.4492177003278336No Hit
TGCATA747750.44850992138135415No Hit
GACACG741070.44450317276908075No Hit
AGGTGT722140.4331487189920844No Hit
CCGCTC708480.4249552779675852No Hit
GCGTAT696710.4178954828827861No Hit
GTACGC693910.4162160074165637No Hit
AAGCAT687280.41223924943761564No Hit
AACCTT686270.41163343864444263No Hit
CGTACT680740.40831647459865333No Hit
ACGAAC661830.3969740170749871No Hit
TCTTCA649020.3892904168170197No Hit
CCGGAA644570.3866212504510591No Hit
CTGGAG639070.38332228078526515No Hit
AAGTTG632420.37933352655298697No Hit
TCCTCC629390.3775160941734677No Hit
CAAGCT629010.3772881653601947No Hit
ATCAGC627640.37646642200707875No Hit
GCGGCT610730.36632358981642854No Hit
GCTGTC602150.36117719713778995No Hit
NNNNNN599910.359833616764812No Hit
AGTAGG597480.3583760719851976No Hit
AGGTCA597250.35823811507190073No Hit
GTTACA595230.3570264934855546No Hit
TGATAA594200.3564086864390514No Hit
GACTAA574730.3447303338221407No Hit
ACGTAA570070.3419352067962134No Hit
CGTTGC560350.3361050276777557No Hit
AGTGCA557620.3344675390981888No Hit
TTCACA552180.33120455819238537No Hit
ACTAGC551170.33059874739921224No Hit
TGCGGA545220.3270298620334897No Hit
TACGAA539680.3237068998610354No Hit
TTCCAT538820.3231910609678385No Hit
CCTCGG535650.32128965481500815No Hit
TATGGT530420.31815263456917137No Hit
GCTTCT528990.3172949024560649No Hit
GCGCAG526280.31566941012982824No Hit
CTGTTC521420.3127543205705994No Hit
CTAGTT516790.3099771879246674No Hit
AGAACG512200.30722404778539564No Hit
AACTAG508370.30492676527267004No Hit
CTGTAT508220.3048367933726938No Hit
TCAATG503120.30177774877350305No Hit
GAGCAC500620.30027821710723307No Hit
ACAGCC497300.29828683905442654No Hit
GCTCAA490100.29396818785556894No Hit
CAACGG487180.29221673486936556No Hit
TCGGAC485110.29097512264969405No Hit
GAACCG483380.28993744673663524No Hit
GCATAA472530.2834294793050235No Hit
GTTGGC458530.2750321019739115No Hit
AGGCTT450550.27024559689517774No Hit
CCGTCG449660.26971176362198557No Hit
GACTTG449590.26966977673533005No Hit
TTCGTT448130.26879405024222836No Hit
TATAAG447920.2686680895822616No Hit
GTCTGC444870.2668386609494123No Hit
ACTAAT441810.2650032341898978No Hit
ATACCT427650.2565098868321446No Hit
AGCCTA413090.24777661440778817No Hit
AACAAT405290.24309807560902577No Hit
TTCTGT398140.23880941504349362No Hit
CTACCG392260.23528251656442659No Hit
ATTCAT390150.23401691183809475No Hit
CGACAA390050.2339569305714439No Hit
GGCGTT382490.2294223468126435No Hit
AGTTAG380360.22814474583298144No Hit
ACCTGC379590.22768289007977027No Hit
GAGTGA379430.22758692005312903No Hit
GAATAC378190.22684315234665908No Hit
ACCAGG376080.22557754762032722No Hit
ATTGAA374680.22473780988721603No Hit
AATGTA372550.223460208907554No Hit
CGAAGC369170.22143284209475694No Hit
GAGTCG363000.21773199794240264No Hit
CCTTAT362840.21763602791576137No Hit
AGATGC351800.2110140960775131No Hit
GACCAT348850.20924464871131448No Hit
TTAGTA348770.20919666369799386No Hit
CAGTCC343100.20579572587889353No Hit
CATAAC338820.20322852766623928No Hit
CCTGCT336120.2016090334666677No Hit
CCATGA336100.20159703721333755No Hit
CCGACT332660.19953368164055005No Hit
GCCATA331650.19892787084737693No Hit
AGACGG280040.16797153912889926No Hit
CAGTAG276390.16578222289614508No Hit
TCGTGG272170.16325101344348134No Hit
GGCCAG269930.16190743307050343No Hit
CACCTA257490.15444576349914393No Hit
GGTGGT231440.13882064353661067No Hit
AAGAGG227690.13657134603720567No Hit
ATGCCG221570.13290049251817673No Hit
ATGGCC219710.13178484095847184No Hit
GCACAT203720.12219383642100899No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)