FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001745293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8355239
Sequences flagged as poor quality0
Sequence length126
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAA155480.18608683725265068No Hit
GTCTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTC153070.18320241946400337No Hit
GGTGTCTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACG147150.17611704464707711No Hit
GGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCT143910.17223923815943507No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGC127830.15299382818373No Hit
GTCGGTGACAAGAAGAGAGGTGGCGTGACCTGTGGATACTGAGGAAGCGT124520.1490322419262932No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGC122920.14711727575955638No Hit
GTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATGCTGAGGAAGTGT121140.14498687589906165No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG120630.14437648043341428No Hit
GTGTGACCTGAGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGT120380.14407726696986164No Hit
GTCGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGCGT119500.1430240355781564No Hit
GCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGT118930.14234182888125643No Hit
GGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGG117190.14025930317493013No Hit
GGCCTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGG117150.14021142902076172No Hit
GTCGGTGACAAGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGGGC115690.13846402239361436No Hit
GGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTG115000.1376381932342091No Hit
GGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGG112910.13513676867890914No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG112340.1344545619820091No Hit
GGGGTGGTGTCACCTGTGGATGCTGAGGAAAGGCTGGTGACAGGAAGAGG112240.13433487659658808No Hit
GCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGGGC106550.12752477816613025No Hit
GTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGTGT105130.12582524569315134No Hit
GTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGT103780.12420949298996714No Hit
CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCT103290.12362303460140397No Hit
GGGGTGGCGTGACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGG101600.1216003515877882No Hit
GTCGGTGACAGGAAGACGGGTGGTGTCACCTGTGGAAGCTGAGGAAAGGC100840.12069074265858822No Hit
GGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGG100660.12047530896483033No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAGCGT94460.11305481506872514No Hit
GGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGG93300.11166646459784095No Hit
GTCCTTTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCT90780.10865039288523044No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATGCTGAGGAAGGGC89170.10672345817995153No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTAGATGCTGAGGAAGGGC88280.10565825824970417No Hit
GGGTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCAT85640.1024985640745884No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG85200.1019719483787358No Hit
CTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATGCT84270.10085887429432001No Hit
GTCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAAGGC83970.10049981813805686No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)