FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001745294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8355239
Sequences flagged as poor quality0
Sequence length126
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC243020.2908594236502391No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACT240810.2882143766324338No Hit
TCCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATC236260.282768691595776No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC228790.27382819330482344No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC200650.24014872584733962No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG184460.2207716619476714No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT173860.20808501109303995No Hit
CCGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACC165260.19779206794682952No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA147540.17658381765021922No Hit
CCGACACTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC147340.17634444687937711No Hit
CCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCC142720.17081498207292453No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCC130810.15656045266927734No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACC129430.1549087943504668No Hit
CCACAGGTCAGGCCATCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATCC123280.14754814314707215No Hit
CCGACACTTCCTCAGTATCCACAGGTCACGCCACCCCTCTTCCTGTCACC112130.13420322267262494No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGTATCC111360.1332816452048828No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACCCCTCTTCCTGTCACC107470.12862588371200392No Hit
CTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACT105370.12611249061816185No Hit
CCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCC104470.12503532214937238No Hit
TCCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATC102640.12284507959616714No Hit
CTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCA97020.11611876093550405No Hit
CTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTT94610.11323434314685671No Hit
TCCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGTATC94080.11260001060412515No Hit
CGCCACCCCTCTTCCTGTCACCGACGCTTCCTCAGTGTCCACAGGTCACG91740.10979937258527253No Hit
GGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCACAGG88780.10625668517680942No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT88420.10582581778929363No Hit
CCAGCCCTTCCTCAGCATCCTCAGGTCACACCACCCCTCTTCCTGTCACC88060.10539495040177785No Hit
CCAGCCCTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC86070.10301321123189894No Hit
TCCACAGGTCAGGCCATCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATC86010.10294140000064629No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCAGCACTTCCTCAGCATCC83930.10045194398388842No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)