FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001745314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8424074
Sequences flagged as poor quality0
Sequence length126
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN700530.8315810141268939No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC192000.22791822578956453No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG165130.19602154491995205No Hit
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC158590.188258080353995No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACT140700.16702132483641527No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT135290.1605992539951572No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC130980.15548296465581854No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC128150.15212354497360778No Hit
CACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCCA123290.14635436488330944No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT119330.14165355147639966No Hit
CCAGCCCTTCCTCAGCATCCTCAGGTCACACCACCCCTCTTCCTGTCACC113930.13524335137606816No Hit
TCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTC110280.13091053093788113No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACC110090.13068498686027685No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCAGCACTTCCTCAGCATCC106570.12650648605413484No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC102400.12155638708776775No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCC102190.1213071015283104No Hit
CCGACACTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC100650.11947900742562327No Hit
CTGCGGGGGCCGCTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTC100190.11893295334300245No Hit
CAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATC97510.11575159477468977No Hit
CCACAGGTCACGCCACCCCTCTTCATGTCACCAGCCCTTCCTCAGCATCC94740.11246339953803824No Hit
CCACAGGTCACGCCACCTCTCTTCTTGTCACCGACGCTTCCTCAGTATCC94670.11238030435155248No Hit
CCCCAGGCTCAGCAGGGAGCTGCTGGATGAGAAAGGGCCTGAAGTCTTGC94070.11166805989596007No Hit
CCACAGGTGACACCACCCCTCTTCCTGTCACCGACGCTTCCTCGGCATCC89280.1059819749921475No Hit
CACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCA88470.10502044497709777No Hit
CCGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACC86280.10242075271418556No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACCCCTCTTCCTGTCACC86000.10208837196824246No Hit
CCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCC84980.10087755639373538No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)