FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001745344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12845541
Sequences flagged as poor quality0
Sequence length126
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG291450.22688806956437257No Hit
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC239920.18677298215777755No Hit
CACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCA202930.15797699762119788No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC200590.1561553538305627No Hit
CACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCCA195170.1519359908625102No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC193740.15082276410156645No Hit
GGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCACAGG192750.15005206865168233No Hit
CACCACCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATCCTCAGGTCACA181470.14127081140451772No Hit
GTCACCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGT178180.1387096113740947No Hit
GGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGG173350.13494955175496307No Hit
CACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG172720.1344591091959459No Hit
GCCCTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACCAGC168360.13106493529544608No Hit
GCCCTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACCGAC167050.13004512616479133No Hit
CAGCATCCTCAGGTCACACCACCCCTCTTCCTGTCACCGACGCTTCCTCA165100.12852708967259532No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT161740.12591139602450377No Hit
GGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGG156370.12173095706907167No Hit
GTCACCAGCCCTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGT152710.11888171934525762No Hit
CACCACGCCGCTTCCTGTCACCGATACTTCCTCAGCATCCACAGGTCAGG150540.1171924171975318No Hit
GACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACCGA146400.11396950895256183No Hit
CTTCAGGTCACACCACCTCTCTTCCTGTCACCGACGCTTCCTCAGTGTCC144810.11273172535123277No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACC141200.10992141164003913No Hit
CCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCC140730.10955552592140727No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)