FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001745350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3471217
Sequences flagged as poor quality0
Sequence length126
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN187960.5414815610778583No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC94030.27088482223957766No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG89740.25852604432393594No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC86640.24959545888372867No Hit
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC84950.24472684940180922No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACT70070.20186003928881427No Hit
CCGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACC59760.17215864061509262No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCC59150.17040133186718087No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA56610.16308401347423684No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT52300.15066761887833577No Hit
CCACAGGTCAGGCCATCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATCC50620.145827817736546No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACC47630.13721412403776542No Hit
CCACAGGTCACGCCACCCCTCTTCATGTCACCAGCCCTTCCTCAGCATCC46900.13511111520829727No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGTATCC46580.13418924832414683No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCGACGCTTCCTCAGTGTCC45540.13119318095065793No Hit
CCACAGGTGACACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCC44750.12891732208041157No Hit
CCAGCCCTTCCTCAGCATCCTCAGGTCACACCACCCCTCTTCCTGTCACC43500.12531627956419894No Hit
CCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCC42830.12338612077550899No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCC42740.12312684571434168No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACCCCTCTTCCTGTCACC41800.1204188617421498No Hit
CGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG41640.11995792830007458No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT41210.11871916967449744No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC40960.11799896117125493No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCAGCACTTCCTCAGCATCC40940.11794134449099553No Hit
CCGACACTTCCTCAGTATCCACAGGTCACGCCACCCCTCTTCCTGTCACC40850.11768206942982821No Hit
CTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACT40840.11765326108969852No Hit
CCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCC40750.11739398602853121No Hit
CCAGCCCTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC39150.11278465160777906No Hit
CACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCCA38650.11134423460129401No Hit
CACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG38410.11065283443818119No Hit
CCGACACTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC38360.1105087927375327No Hit
TCCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATC37850.10903956739091794No Hit
CCACAGGTGACACCACCCCTCTTCCTGTCACCGACGCTTCCTCGGCATCC36250.10443023297016579No Hit
CAGCCTTTCCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACTA35860.10330670770510747No Hit
CCACAGGTCACGCCACCTCTCTTCTTGTCACCGACGCTTCCTCAGTATCC35730.10293219928342134No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC35310.1017222489979739No Hit
CTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCA35120.10117489053550958No Hit
GGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCACAGG35040.10094442381447198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)