FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001745358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4761498
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGATCCCACCA120630.25334464069920853No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT113990.23939944950097636No Hit
AGGATGTGGATGCTGCCTACATGAACAAGGTTGAACTGCAAGCCAAGGCA98870.20764473701343567No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC78380.16461206116226448No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA76200.1600336700760979No Hit
GTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGATCCCACCAT65900.13840182228365946No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC65670.13791878102227492No Hit
CAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCC63170.13266833252896462No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAG61920.13004310828230947No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG61160.12844697194034316No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT60110.1262417835731528No Hit
CCTCAACCTGCAAATCGATCCCACCATCCAGCGGGTGCGGGCCGAGGAGC59870.12573774051779502No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG55790.11716900857671263No Hit
CTTCAAGAACAAATATGAGGATGAAATCAACAAGCGCACAGCAGCAGAGA54970.11544686147090684No Hit
GGATGTGGATGCTGCCTACATGAACAAGGTTGAACTGCAAGCCAAGGCAG53860.11311566233987706No Hit
CCGTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGATCCCACC52880.11105748653049943No Hit
CCTGACTCCCCTCAACCTGCAAATCGATCCCACCATCCAGCGGGTGCGGG48900.10269877252914944No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)