FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001745366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6787780
Sequences flagged as poor quality0
Sequence length126
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT173940.25625462227709206No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA133500.19667696949518107No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG95780.14110651788950143No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG88700.13067600894548734No Hit
GGATGATAATCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCAC71470.10529215737693325No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT70220.10345061271873869No Hit
GCCCTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACCGAC68700.10121129441437407No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC68300.1006220001237518No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG68060.10026842354937844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)