FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001745378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5197890
Sequences flagged as poor quality0
Sequence length126
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC466240.8969793512367519No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA364190.7006496866997955No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATC363340.6990144077693063No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC277110.5331201699151001No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACTAC272680.524597480900904No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACCGGCAC227140.4369850073779938No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACA195750.3765951184038138No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATC191300.3680339522383121No Hit
CCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCACCACCAC184920.3557597409718174No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATC184140.354259132070898No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA171460.32986461814313117No Hit
CCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCACCACCAC163660.314858529133937No Hit
CCCATCACCACCACTACGGTGACCCCAACCCCAACACCCACCAGCACACA159810.30745167750760405No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC157630.30325766801529086No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA151830.2920992941366593No Hit
CCCACCGGCACACAGAGTACAACCCTGACACCCATCACCACCACCACCAC150520.28957904072614077No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC149730.2880591932495686No Hit
CCCTGACACCCATCACCACCACCACCACGGTGACACCAACCCCAACACCC141530.27228356121426195No Hit
CCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACC138260.2659925469757921No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC137340.26422259801573333No Hit
CCCATCTCCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC137250.264049450834858No Hit
CCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC137170.26389554222963546No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATC135870.2613945273947698No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCAC135030.2597784870399335No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACA134570.2588935125599041No Hit
CCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC122860.23636514047046014No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA122660.23598036895740387No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAAC114530.22033940695166693No Hit
CATCGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCC108910.20952732743478603No Hit
CACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGC103850.19979260815446268No Hit
CCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC102350.19690682180654073No Hit
ACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCAC100880.19407875118557721No Hit
CACAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCA97250.18709514822360612No Hit
CAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAAC95340.18342058027391886No Hit
CACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCA94430.18166986988951286No Hit
CCCACCGGCACACAGACCCCAACCCCGACACCCATCACCACCACCACCAC94260.18134281410341505No Hit
CAGAGTACAACCCTGACACCCATCACCACCACCACCACGGTGACACCAAC91910.17682174882500398No Hit
CAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCAAC90940.17495560698668114No Hit
CCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCA89770.17270469363530203No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACTGGCAC86710.16681768948554127No Hit
CAACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCC85790.16504774052548246No Hit
CCCACCGGCACACAGACCCCAACCATGACACCCATCACCACCACCACCAC82630.15896835061919357No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATCA81620.15702525447825946No Hit
CCCTGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCC81020.15587093993909068No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACCAC80970.1557747470608266No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACA80870.15558236130429848No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC79790.15350459513379466No Hit
CACAGAGTACAACCCTGACACCCATCACCACCACCACCACGGTGACACCA79660.1532544936503081No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACTGGCAC75680.14559754054048854No Hit
CCCACTGGCACACAGACCCCAACATCGACACCCATCACCACCACCATTAC75570.1453859162083076No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAT75290.14484723609002884No Hit
CTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACG74660.1436352058239016No Hit
CCCATCACCACCACCACCACGGTGACACCAATCCCAACACCCACTGGCAC73670.14173058683427314No Hit
CCCCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCC71710.1379598260063218No Hit
CCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAAC70180.13501632393144142No Hit
CCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCAC68090.1309954616200035No Hit
CCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCAC66770.12845596963383218No Hit
ACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCC66770.12845596963383218No Hit
CCCATCACCACCACCACTACCGTGACCCCAACCCCAACACCCACCGGCAC66070.1271092693381353No Hit
CCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACA65880.12674373640073183No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACA65770.1265321120685509No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACAC63430.12203028536579266No Hit
CCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCA62990.12118378803706888No Hit
CGGTGACACCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACA61750.11879820465612008No Hit
CGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACC61720.11874048892916164No Hit
CCCATCACCACCACCACTACTGTGACCCCAACCCCAACACCCACCGGCAC60980.11731683433085349No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCAC60750.11687434709083878No Hit
CCCACCGGCACACAGACCCCAACCCCGACACCCATCTCCACCACCACTAC60440.11627795124560159No Hit
GCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC58650.11283424620374806No Hit
CATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACAC56920.10950597261581141No Hit
CCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAAC56740.10915967825406078No Hit
CGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACC56660.10900576964883828No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCATGACACCCATC56510.10871719101404609No Hit
CCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCG56320.10835165807664264No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCATGACACCCATCA55600.1069664806296401No Hit
GCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC53990.10386906994953721No Hit
CACAGACCCCAACCATGACACCCATCACCACCACCACCACGGTGACCCCA53440.1028109482886325No Hit
CCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACC53350.10263780110775719No Hit
CACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGC52930.10182978093033904No Hit
CAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACC52750.10148348656858841No Hit
CCCCAACCCCAACACCCACCGGCACACAGAACCCAACATCGACACCCATC52600.10119490793379621No Hit
CCCCAACCCCAACACCCACCGGCACACAGAGTACAACCCTGACACCCATC52490.10098328360161528No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)