FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001745384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001745384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5628270
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC97560.17333923212639052No Hit
CTGCAACCTGACGCAATGCTCAGACGCAGAAGGGACTGCCGTCGCGCCTC94220.167404904171264No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC93290.16575253141729163No Hit
CATGAACTACTGCAGGAATCCAGATGCTGTGGCAGCTCCTTATTGTTATA90260.1603689943801559No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT87770.15594489958726215No Hit
CTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTACTCATT79240.14078926561803182No Hit
GTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTAT76930.13668498490655212No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT76920.13666721745758467No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT75580.13428637929594706No Hit
GTTTCGTCGAGATGCACACAAGAGTGAGGTTGCTCATCGGTTTAAAGATT75530.13419754205110984No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA68420.12156488583525667No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCCACCATGCCCCAGGCTC68350.12144051369248454No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT67940.12071204828481932No Hit
CTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCATT63960.11364060359577632No Hit
CCCGGTTCCAAGCCTAGAGGCTCCTTCCGAACAAGCACCGACTGAGCAAA58260.10351315768433285No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC57940.10294459931737461No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG57690.10250041309318848No Hit
TGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCC56880.10106124972682547No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)