FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001750576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001750576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35171942
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC701550.19946296965916754No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC628210.1786111213307471No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC446090.12683121108297063No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)