FastQCFastQC Report
Fri 10 May 2024
EGAF00001750783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001750783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33015153
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC1716700.5199733588997755TruSeq Adapter, Index 12 (100% over 50bp)
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA477730.1447002229551988No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG408080.12360384942029497No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT365550.11072188579589498No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)