FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001750953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001750953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41576506
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT17840594.291026764009462No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCG775840.18660538718669625No Hit
CTTATACACATCTCCGAGCCCACGAGCCCTCTCTACATCTCGTATGCCGT490750.11803541163367601No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCC479650.11536563462066773No Hit
CTTATACACATCTCCGCGCCCACGAGACCTCTCTACATCTCGTATGCCGT462560.11125514010244152No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)