FastQCFastQC Report
Sat 11 Mar 2023
EGAF00001752587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001752587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99578340
Sequences flagged as poor quality0
Sequence length41-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG2005220.20137110138610465Illumina Single End PCR Primer 1 (100% over 41bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1077600.10821630487111956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)