FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001753953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001753953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10438063
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTA1867631.7892495954469714TruSeq Adapter, Index 14 (97% over 44bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT1066531.0217700353025267TruSeq Adapter, Index 14 (97% over 44bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC124480.1192558427746604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)