FastQCFastQC Report
Tue 27 Sep 2022
EGAF00001753981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001753981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20315137
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTA4008721.973267519682491TruSeq Adapter, Index 19 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT2152151.0593824693380114TruSeq Adapter, Index 19 (97% over 40bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC352800.1736636085693146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)