FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001754545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001754545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15654889
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTA8683855.547053064381357TruSeq Adapter, Index 18 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT2053151.311507223079001TruSeq Adapter, Index 18 (97% over 40bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC247170.15788677901197512No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)