FastQCFastQC Report
Fri 31 Mar 2023
EGAF00001754761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001754761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21005994
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTA2447411.1651007802820472TruSeq Adapter, Index 14 (97% over 44bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT1082060.5151196368046187TruSeq Adapter, Index 14 (97% over 44bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC246480.11733793697170436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)