FastQCFastQC Report
Sat 11 May 2024
EGAF00001755025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001755025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23876673
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG1352500.5664524534050452TruSeq Adapter, Index 12 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC791130.33134013268934076TruSeq Adapter, Index 12 (100% over 50bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC365580.15311178404126907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)