FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001755371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001755371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18975615
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG782400.41231865212273755TruSeq Adapter, Index 12 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC500770.26390185509138964TruSeq Adapter, Index 12 (100% over 50bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC249520.13149507934261945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)