FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001756401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001756401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18782624
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG2593531.3808134582260712TruSeq Adapter, Index 1 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC1708590.9096652310135154TruSeq Adapter, Index 1 (100% over 50bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC228660.12174017858207671No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATATCGTATG217840.11597953512778619TruSeq Adapter, Index 1 (97% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)