FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001756613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001756613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18562630
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTA2996241.6141247226282054TruSeq Adapter, Index 20 (97% over 44bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT1004480.5411302170005005TruSeq Adapter, Index 20 (97% over 44bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC217420.11712779923965515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)