FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001756799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001756799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18306682
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTA2421591.3227902249025794TruSeq Adapter, Index 14 (97% over 44bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT778630.4253255723784354TruSeq Adapter, Index 14 (97% over 44bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC289600.15819360384366757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)