FastQCFastQC Report
Tue 7 Feb 2023
EGAF00001757738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001757738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174650150
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA2821690.16156241491919704No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG2794830.16002448323119103No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1998450.11442589657094483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)