FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001757741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001757741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104984651
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1501570.1430275745737346No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1201970.11449006960074573No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1192380.11357660273595613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)