FastQCFastQC Report
Thu 23 May 2024
EGAF00001762173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001762173
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences85839384
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1468870.17111842275103No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1452920.1692603013087792No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN918710.10702663010722445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)