FastQCFastQC Report
Tue 7 May 2024
EGAF00001775041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001775041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10905
Total Bases2.7 Mbp
Sequences flagged as poor quality0
Sequence length40-607
%GC56

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCCGG122511.233379183860615No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCCTC7787.134342044933517No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCAGCCGG7647.005960568546538No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCCTC5965.465382851902797No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTCGA5805.318661164603393No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTCTG5014.594222833562586No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACTGTGAGTCTG4484.10820724438331No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTAGGATGGAGAGTCGA3983.6497019715726733No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCCTG3473.1820265933058227No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCCGT3042.7877120586886748No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGAGCCGT2021.852361302154975No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACCTG1991.8248509857863366No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGAGCCTG1861.7056396148555708No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCCGC1541.412196240256763No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCTCCAGGCACTGTCCTCA1541.412196240256763No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACGGTTAACCTG1391.2746446584135718No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCCTG1321.2104539202200826No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTGTCACAGTGAGCCTG1201.1004126547455295No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCTGG1020.9353507565337001No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCTGATG1020.9353507565337001No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTGGTCAATATCTGATG950.871160018340211No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAGGT920.8436497019715726No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCCAAGACAGAGAGCTGG880.8069692801467218No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACCAGGAGCCGC880.8069692801467218No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAGAGGG850.7794589637780834No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAGGG790.724438331040807No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCCTA770.7060981201283815No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCGAGCACTGTCAGCCGGG720.6602475928473178No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAGAGGT630.5777166437414031No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCCGG530.48601558917927556No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCTAGGATGGAGAGTCGAG490.4493351673544246No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGTACGGTCAGCCTA420.38514442916093533No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCCAA390.3576341127922971No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACTGAGAGCCGG340.31178358551123336No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTCTGCCCATCCCGCCC330.30261348005502064No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACAGTGAGCCAA310.28427326914259515No Hit
ATACGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCCGG290.26593305823016966No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCTAGCACGGTGAGCCGTG270.24759284731774417No Hit
ACGGTACGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACTGTCAGCCG250.22925263640531865No Hit
ATACGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCTGCCCATCCCGCCC240.2200825309491059No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCTACAACTGTGAGTCTGG220.20174232003668044No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCCTG210.19257221458046767No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCTGTGACCGTGAGCCTGG190.17423200366804217No Hit
ACGGTACGGGTGGGAACACGTTTTCAGGTCCTCGAGCACCAGGAGCCGCG180.16506189821182946No Hit
ACGGTACGGGTGGGAACACGTTTTTTCAGGTCCTCTACAACTGTGAGTCT180.16506189821182946No Hit
ATACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCCTG140.12838147638697844No Hit
ACGGTACGGGTGGGAACACGTTTTTCAGGTCCTTCGAGCACTGTCAGCCG120.11004126547455295No Hit
ATACGTCGGGTGGGAACACCTTGTTCAAGTCCTCTCCAGGCACTGTCCTC120.11004126547455295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)