FastQCFastQC Report
Tue 7 May 2024
EGAF00001775046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001775046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12094
Total Bases3 Mbp
Sequences flagged as poor quality0
Sequence length40-628
%GC56

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAG11389.409624607243261No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCAG10168.400859930544073No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAG8156.738878782867537No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG6805.6226227881594175No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGAG5404.465023978832479No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGAG5014.142550024805688No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAA4894.043327269720522No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAG3763.1089796593352075No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAG3653.018025467173805No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAG3492.8857284603935835No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCT3492.8857284603935835No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGGATGGAGAG3262.695551513147015No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGT2982.4640317512816274No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACCAGGAG2752.273854804035059No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAG2602.149826360178601No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACTGTGAG2482.050603605093435No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAG2141.769472465685464No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAG1861.537952703820076No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAG1751.4469985116586739No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAG1281.0583760542417728No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACGGTTAA1160.9591532991566065No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGTACGGTCAG1050.8681991069952042No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGT940.7772449148338019No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACTGAGAG830.6862907226723995No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGTCAATATCT830.6862907226723995No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAG800.661485033901108No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAG800.661485033901108No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCGAGCACTGTCAGC720.5953365305109971No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAAGACAGAGAG640.5291880271208864No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACGGTCAG590.4878452125020671No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAG530.43823383495948404No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTGTGACCGTGAGC510.42169670911195634No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTCACAGTGAG510.42169670911195634No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTCCAGGCACTGTC460.3803538944931371No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCGAGCACCAGGAGC390.32247395402679013No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTAGCACGGTGAGC360.29766826525549855No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTAGGATGGAGAGT340.2811311394079709No Hit
TGCATATAGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG320.2645940135604432No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACAGTGAG240.1984455101703324No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTTCAGGTCCTCTAGCACGGTGA220.1819083843228047No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTCCT190.15710269555151316No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAGGGAAGA180.14883413262774928No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCTAGGATGGAGA170.14056556970398545No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACTGTCA170.14056556970398545No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCTACAACTGTGA160.1322970067802216No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTACAACTGTGAGT150.12402844385645775No Hit
GTGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGA150.12402844385645775No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCCTAACTGC150.12402844385645775No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCGAGCACTGTCA140.11575988093269389No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCTGCCCATCCC140.11575988093269389No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAC130.10749131800893005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)