FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001775046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001775046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12094
Sequences flagged as poor quality0
Sequence length40-628
%GC56

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAG11189.244253348767984No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCAG10098.342979990077724No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAG7996.606581776087316No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG6755.581279973540599No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGAG5274.357532660823549No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGAG4944.084670084339342No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAA4743.9192988258640646No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAG3713.067636844716388No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAG3602.976682652554986No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAG3472.869191334546056No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCT3412.819579957003473No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGGATGGAGAG3222.6624772614519596No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGT2802.315197618653878No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACCAGGAG2732.257317678187531No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAG2542.100214982636018No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACTGTGAG2462.034066479245907No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAG2121.7529353398379361No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAG1841.5214155779725484No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAG1701.4056556970398544No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAG1281.0583760542417728No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACGGTTAA1150.9508847362328426No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGTACGGTCAG1050.8681991069952042No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGT930.768976351910038No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGTCAATATCT820.6780221597486357No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACTGAGAG800.661485033901108No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAG800.661485033901108No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAG780.6449479080535803No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCGAGCACTGTCAGC720.5953365305109971No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAAGACAGAGAG630.5209194641971225No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACGGTCAG580.47957664957830326No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAG530.43823383495948404No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTCACAGTGAG510.42169670911195634No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTGTGACCGTGAGC500.4134281461881925No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTCCAGGCACTGTC430.35554820572184553No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCGAGCACCAGGAGC370.3059368281792625No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTAGCACGGTGAGC360.29766826525549855No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTAGGATGGAGAGT320.2645940135604432No Hit
TGCATATAGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG320.2645940135604432No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTCAGGTCCTCTACAACAGTGAG240.1984455101703324No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTTCAGGTCCTCTAGCACGGTGA220.1819083843228047No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTCCT190.15710269555151316No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAGGGAAGA180.14883413262774928No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCTAGGATGGAGA170.14056556970398545No Hit
CGATGCACGTCGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACTGTCA170.14056556970398545No Hit
GTGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGA150.12402844385645775No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCTACAACTGTGA150.12402844385645775No Hit
CGATGCACGTCGGGTGGGAACACGTTTTCAGGTCCTCTACAACTGTGAGT140.11575988093269389No Hit
TGCATATAGTCGGGTGGGAACACCTTTGTTCAGGTCCTCGAGCACTGTCA140.11575988093269389No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTCTGCCCATCCC140.11575988093269389No Hit
TGCATATAGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAC130.10749131800893005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)