FastQCFastQC Report
Tue 7 May 2024
EGAF00001775047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001775047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14644
Total Bases3.8 Mbp
Sequences flagged as poor quality0
Sequence length40-523
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG153210.461622507511608No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAG14329.778748975689702No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAG12548.56323408904671No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGAG12208.33105708822726No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCAG12068.235454793772194No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGAG9656.589729582081398No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCCAGCACTGAGAG6384.356733133023764No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAG5904.028953837749249No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAG4953.3802239825184377No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAG4222.881726304288446No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAG4032.7519803332422836No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAG3552.424201037967768No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACTGTGAG2891.9735045069653099No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACAGTGAG2181.4886642993717563No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTAGGATGGAGAG2071.4135482108713466No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCTAGCACGGTGAGC1501.02431029773286No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCGAGCACTGTCAGC1170.7989620322316306No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCTGTGACCGTGAGC1160.7921332969134116No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCT990.6760447965036875No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAG970.6623873258672494No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAG820.5599562960939634No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCTACAACTGTGAGT620.4233815897295821No Hit
AGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACCAGGAG610.41655285441136297No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTGGTCAATATCT590.40289538377492484No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACTGTCA520.3550942365473914No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCCAGCACTGAGAGC440.3004643540016389No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCTGGAAAGGGAA400.27314941272876264No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCTGTGACCGTGA390.26632067741054355No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCTAGGATGGAGAGT360.24583447145588638No Hit
AGATCACTGTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG300.204862059546572No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCTAGCACGGTGA270.18437585359191477No Hit
AGATCACTGTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAG250.17071838295547664No Hit
GCTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGA250.17071838295547664No Hit
CTAGCTGTGACGGGTGGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCA220.15023217700081945No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCTACAACAGTGA200.13657470636438132No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTCAGGTCCTCTGGAAAGGGAAGA200.13657470636438132No Hit
GCTAGCTGTGACGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGA180.12291723572794319No Hit
CTAGCTGTGACGGGTGGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGA180.12291723572794319No Hit
AGATCACTGTCGGGTGGGAACACCTTTGTTCAGGTCCTCTAGCACGGTGA170.11608850040972411No Hit
CTAGCTGTGACGGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGA160.10925976509150505No Hit
GAGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGA160.10925976509150505No Hit
CTAGCTGTGACGGGTGGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGA160.10925976509150505No Hit
GAGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCA150.102431029773286No Hit
AGATCACTGTCGGGTGGGAACACCTTTGTTCAGGTCCTCGAGCACTGTCA150.102431029773286No Hit
GAGATCACTGTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGA150.102431029773286No Hit
CTAGCTGTGACGGGTGGGAACACGTTTTTTCAGGTCCTCTAGGATGGAGA150.102431029773286No Hit
CTAGCTGTGACGGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCA150.102431029773286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)