FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001775058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001775058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9500
Sequences flagged as poor quality0
Sequence length40-676
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAG8338.76842105263158No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAG7427.810526315789473No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGT6506.842105263157896No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAG6486.821052631578947No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACTGTGAG5996.305263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAG4624.863157894736842No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTAGGATGGAGAG4284.505263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACGGTTAA2282.4No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTCCAGGCACTGTC2112.221052631578947No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAG1942.042105263157895No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAG1922.0210526315789474No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCCAAGACAGAGAG1411.4842105263157894No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTGTCACAGTGAG1091.1473684210526316No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTGGTCAATATCT961.0105263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTGTGACCGTGAGC900.9473684210526316No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGT760.8No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTAGCACGGTGAGC740.7789473684210526No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCTCCAGGCACTGTCC700.7368421052631579No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTACAACTGTGAGT680.7157894736842105No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCGAGCACTGTCAGC580.6105263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAG560.5894736842105264No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTACAACAGTGAG530.5578947368421052No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACTGTCA470.4947368421052632No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCGAGCACCAGGAGC420.4421052631578947No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAG390.4105263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTAGGATGGAGAGT390.4105263157894737No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCTGTGACCGTGA370.3894736842105263No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCTAGCACGGTGA350.3684210526315789No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCTAGGATGGAGA320.3368421052631579No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAG300.3157894736842105No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCTGTGACCGTGAGCC260.27368421052631575No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTGGAAAGGGAAGA250.2631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCTCTGCCCATCCC250.2631578947368421No Hit
TACGACTGAGCGGGTGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTC250.2631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCTAGCACGGTGAGCC240.25263157894736843No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTAGCACGGTGAG230.24210526315789474No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCTAGGATGGAGAGTC210.22105263157894736No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCGAGCACTGTCAGCC190.2No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCTCCAGGCACT180.1894736842105263No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCTACAACTGTGA170.17894736842105263No Hit
TACGACTGAGCGGGTGGACGACCTAGGTCAGGTCCTCTCCAGGCACTGTC170.17894736842105263No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCTACAACGGTTA160.16842105263157894No Hit
TACGACTGAGCGGGTGGACGACCTTAGGTTCAGGTCCTCTCCAGGCACTG160.16842105263157894No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAG140.1473684210526316No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCCAAGACAGAGAGC140.1473684210526316No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCTAGCACGGTG140.1473684210526316No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCGAGCACTGTCAG140.1473684210526316No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCTACAACTGTGAGTC130.13684210526315788No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCTAGGATGGAG130.13684210526315788No Hit
ATGTCATATACGGGTGGAACACGTTTCAGGTCCTCTCCAGGCACTGTCCT130.13684210526315788No Hit
TACGACTGAGCGGGTGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGT130.13684210526315788No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCCAGTACGGTCAGC120.12631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCTAGGTCCTCGAGCACTGTCA120.12631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTTAGGTCCTCTAGCACGGTGAGC120.12631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTTAGGTCCTCGAGCACTGTCAGC120.12631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCGAGCACCAGGA120.12631578947368421No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCTACAACTGTG120.12631578947368421No Hit
ATGTCATATACGGGTGGGAACACGTTTTCAGGTCCTCTGGTCAATATCTG110.11578947368421054No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCGAGCACTGTC110.11578947368421054No Hit
TACGACTGAGCGGGTGGAACGACCTTAGGTTCAGGTCCTCTGTGACCGTG110.11578947368421054No Hit
ATGTCATATACGGGTGGGAACACGTTTCAGGTCCTCGAGCACCAGGAGCC110.11578947368421054No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCTGTGACCGTGAG110.11578947368421054No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCTAGGTCCTCTAGCACGGTGA110.11578947368421054No Hit
ATGTCATATACGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAG110.11578947368421054No Hit
ATGTCATATACGGGTGGGAACTACGTTTTTCAGGTCCTCTAGCACGGTGA110.11578947368421054No Hit
TACGACTGAGCGGGTGGACGACCTAGGTTCAGGTCCTCTACAACTGTGAG100.10526315789473684No Hit
ATGTCATATACGGGTGGGAACACGTTTTTAGGTCCTCTGTGACCGTGAGC100.10526315789473684No Hit
TACGACTGAGCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAG100.10526315789473684No Hit
ATGTCATATACGGGTGGGAACACGTTTTTTCAGGTCCTCCAGTACGGTCA100.10526315789473684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)