FastQCFastQC Report
Fri 3 May 2024
EGAF00001778168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001778168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43520461
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC625070.1436266954984691No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA568260.1305730653910123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)