FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001778180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001778180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52214441
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC650980.12467432142000716No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA603810.11564042215830674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)