FastQCFastQC Report
Wed 22 Mar 2023
EGAF00001789804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116150562
Sequences flagged as poor quality0
Sequence length20-50
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC9245410.795984956146833No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT3735430.32160240430003256No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT2528980.21773291118470867No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT2234540.1923830553656727No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATG1926250.16584078172604966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)