FastQCFastQC Report
Mon 3 Apr 2023
EGAF00001789805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116150562
Sequences flagged as poor quality0
Sequence length20-50
%GC29

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCAC11493790.9895595683815976No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAA7611350.6553003161534423No Hit
CAACTAATTTTTTATATTTTTAATAAAAACAAAATTTCAC3466450.29844453098728874No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTC3096330.2665789942540269No Hit
CGACTAATTTTTTATATTTTTAATAAAAACGAAATTTCAC2967750.25550887993120514No Hit
CAACTAATTTTTTATATTTTTAATAAAAATAAAATTTCAC2692550.23181549478856592No Hit
CAACTAATTTTTATATTTTTAATAAAAACGAAATTTCACC2133960.18372360522887526No Hit
CAACTAATTTTTTTATATTTTTAATAAAAACGAAATTTCA2087220.17969951794120462No Hit
CGAACGCGATAACTCACGCCTATAATCCCAACACTTTAAA1800190.15498762717997008No Hit
CGGCTAATTTTTTATATTTTTAATAAAAACGAAATTTCAC1548840.13334761135292655No Hit
CAACTAATTTTTATATTTTTAATAAAAACAAAATTTCACC1547590.13323999241605047No Hit
CAACTAATTTTTATATTTTTAATAAAAATAAAATTTCACC1466340.12624476151910483No Hit
CAAACACGATAACTCACGCCTATAATCCCAACACTTTAAA1379750.11878978252382456No Hit
CAAACGCGATAACTCACACCTATAATCCCAACACTTTAAA1346780.11595122544478088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)