FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001789807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119473417
Sequences flagged as poor quality0
Sequence length20-40
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCAC6861500.5743118571723784No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAA3941480.32990435018695413No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAAC3695580.30932236582804024No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAA3093960.25896639417285605No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTC2439320.2041726152354042No Hit
CAACTAATTTTTTATATTTTTAATAAAAACAAAATTTCAC2392850.2002830470647709No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCAAATAAC2294630.1920619714090876No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAAC2207880.18480094195347238No Hit
GACTGGAGTTCAGACGTGTGCTCTTCCGAT2118490.1773189428406488Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
CGACTAATTTTTTATATTTTTAATAAAAACGAAATTTCAC1507310.1261627931843617No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAA1350670.11305192685666637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)