FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001789814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101178235
Sequences flagged as poor quality0
Sequence length20-50
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC6717730.6639501074514692No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT3632070.35897740260047034No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATG2755660.27235699456508605No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT2384180.23564158833171978No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT1752280.17318744490848254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)