FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001789895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106659099
Sequences flagged as poor quality0
Sequence length50
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA2459940.23063573788486627No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA2445560.22928751723282417No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA2316100.21714978109837585No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC1860920.17447362835870195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)