FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001789900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116847998
Sequences flagged as poor quality0
Sequence length20-50
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC8189990.700909740875492No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT3588120.3070758644919188No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATG2579890.22079026120755615No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT2265870.19391603097898177No Hit
CGGGATGGTTTCGATTTTTTGATTTCGTGATTCGTTCGTTTCGGTTTTTT2235420.19131008132462826No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATT1846980.15806689302455998No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGT1772840.15172189770850847No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTTAAGTAGTTGGGATT1414550.12105898468196263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)