FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001789905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001789905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112238444
Sequences flagged as poor quality0
Sequence length50
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACACCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA2141830.1908285542518747No Hit
CAAACACAATAACTCACACCTATAATCCCAACACTTTAAAAAACCAAAAC1441340.12841767478529906No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA1157990.10317231411369175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)