FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001794985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001794985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45130304
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGCCTAAATCTCGTA4801641.0639502893665418TruSeq Adapter, Index 27 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGCCTAAATCTCGTAT2013790.44621680368029426TruSeq Adapter, Index 27 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)